PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G224000.1.p
Common NameGLYMA_20G224000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 672aa    MW: 77036.6 Da    PI: 6.4227
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G224000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.42.1e-19178257286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++evlaL+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +i+ g++++++++ss+++++++le
  Glyma.20G224000.1.p 178 WNNDEVLALLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELE 257
                          ********************987.....9*****************************************************998 PP
2trihelix95.83.9e-30509597186
             trihelix   1 rWtkqevlaLiearr....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k+evlaLi++r     + +++ ++g+ k plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Glyma.20G224000.1.p 509 RWPKDEVLALINLRCtsvnNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 597
                          8************9843334444444689*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029415.083168IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.7E-14665IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.85E-13762IPR017986WD40-repeat-containing domain
SMARTSM003202.2E-52059IPR001680WD40 repeat
PROSITE profilePS5008211.0432758IPR001680WD40 repeat
PfamPF138374.9E-12176258No hitNo description
PROSITE profilePS500906.121177229IPR017877Myb-like domain
CDDcd122031.24E-21508577No hitNo description
PfamPF138371.2E-19508598No hitNo description
PROSITE profilePS500906.284509570IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MVTDLIGSDD LTAKVWDYQT KSCVHTLEGH AYNASAVCFH PELPIIITGH KDGTERIWHS  60
TTYGKEEVKK REVVTQNTNT NMFDGVPDQF HQFITPRTSL PLHLPFPLHT SGGTPNTTTF  120
PSNFDPYNHP HQLPLQPNNL LHPLHHKDED KEENTTVPMN LEIQRDQRQQ LPELIDPWNN  180
DEVLALLRIR SSMESWFPEL TWEHVSRKLA ELGYKRSAEK CKEKFEEESR YFNNINYGKN  240
NNNNNNSSNY RFLSELEQLY HQGGSGDHHL ENTTQPPLQK QDKMGHHALE LEVEGDSRNV  300
VDALVTKQNE QSDEALAVEK ITKDRKRKRP DRFEMFKCFC ESIVHKIMAQ QEEMHNKLLE  360
DMMKRDDEKF TREEAWKKQE IEKMNKELEM MAREQAIAGD RQANIIQILN KFSATSSPAS  420
HTLKKVNNDS NINTHITQNP NPSQTENPTL SVAQDTLQVI PSTSSTSTPA LPQNPSTYSL  480
NIQNNNNNIP VETNSVLNKG NEKDDVGRRW PKDEVLALIN LRCTSVNNNN NEEKEGNNKV  540
PLWERISQGM LELGYKRSAK RCKEKWENIN KYFRKTKDVN KKRSLDSRTC PYFHQLSSLY  600
NQGKPVLQSE SHLNSPPNQN PEQVTPDQTT QAHESSSQVG SGGGFSVQQQ QVDHGGEKTL  660
MQVPSLDFDQ F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a1u_D2e-19763205261COATOMER SUBUNIT BETA'
5a1v_D2e-19763205261COATOMER SUBUNIT BETA
5a1v_L2e-19763205261COATOMER SUBUNIT BETA
5a1v_U2e-19763205261COATOMER SUBUNIT BETA
5a1w_D2e-19763205261COATOMER SUBUNIT BETA'
5a1x_D2e-19763205261COATOMER SUBUNIT BETA'
5a1x_L2e-19763205261COATOMER SUBUNIT BETA'
5a1y_D2e-19763205261COATOMER SUBUNIT BETA'
5a1y_L2e-19763205261COATOMER SUBUNIT BETA'
5nzr_C2e-19763205261Coatomer subunit beta'
5nzs_C2e-19763205261Coatomer subunit beta'
5nzt_C2e-19763205261Coatomer subunit beta'
5nzt_H2e-19763205261Coatomer subunit beta'
5nzu_C2e-19763205261Coatomer subunit beta'
5nzv_C2e-19763205261Coatomer subunit beta'
5nzv_J2e-19763205261Coatomer subunit beta'
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.418930.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G224000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217540.0EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556463.20.0trihelix transcription factor GTL2
TrEMBLA0A0R0EEU80.0A0A0R0EEU8_SOYBN; Uncharacterized protein
STRINGGLYMA20G36680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-95Trihelix family protein