PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 394aa MW: 43213.4 Da PI: 8.8387

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G193600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	124	178	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl Glyma.20G193600.1.p 124 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 178 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-32	121	179	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.726	121	181	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.3E-23	124	179	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.58E-16	124	180	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	126	177	IPR001005	SANT/Myb domain
Pfam	PF14379	6.4E-13	220	265	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MIGGKQRAAN AKKEEKKGKA AESDKIPVKS DSASSLKPKS CAFHIPIFPF PFLLPLSPNG 60 SPITQSSPFF FPLSFFFASR WGFKFHHRMF SRLIHPHEGQ EDMQGGSNHA HLGDPCLVLT 120 SDPKPRLRWT ADLHERFVDA VTQLGGASKA TPKAIMRTMN VKGLTLYHLK SHLQKYRLGK 180 QSGKDSDEGC KDGMSASYLQ ESPGTDNSSP KLPDANEGHE VKEALRAQME VQSKLHLLVE 240 AEKHLQIRQD AERRYMGMLE RACKMLADQF IGDVTIDMDG QKFQGLESKT SRSSLVDHVG 300 FYPQACTEVG GMHASVVSPI LQPQGADCFT ESCLTSLESL GGLTLEGSPG GSKKRMLNLD 360 SMVAPLIWSE ANTRTQGIHL AKVNPSGMTR YGM*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MIGGKQRAAN AKKEEKKGKA AESDKIPVKS DSASSLKPKS CAFHIPIFPF PFLLPLSPNG  60
SPITQSSPFF FPLSFFFASR WGFKFHHRMF SRLIHPHEGQ EDMQGGSNHA HLGDPCLVLT  120
SDPKPRLRWT ADLHERFVDA VTQLGGASKA TPKAIMRTMN VKGLTLYHLK SHLQKYRLGK  180
QSGKDSDEGC KDGMSASYLQ ESPGTDNSSP KLPDANEGHE VKEALRAQME VQSKLHLLVE  240
AEKHLQIRQD AERRYMGMLE RACKMLADQF IGDVTIDMDG QKFQGLESKT SRSSLVDHVG  300
FYPQACTEVG GMHASVVSPI LQPQGADCFT ESCLTSLESL GGLTLEGSPG GSKKRMLNLD  360
SMVAPLIWSE ANTRTQGIHL AKVNPSGMTR YGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	124	180	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	124	180	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	124	180	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	124	180	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55712	0.0	cotyledon\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G193600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093210	0.0	BT093210.1 Soybean clone JCVI-FLGm-14A7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028219495.1	0.0	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	2e-60	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A445F7D7	0.0	A0A445F7D7_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBL	K7N4H4	0.0	K7N4H4_SOYBN; Uncharacterized protein
STRING	GLYMA20G33540.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	8e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G193600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]