 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.20G166500.1.p |
Common Name | GLYMA_20G166500, LOC100816474 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
Trihelix |
Protein Properties |
Length: 446aa MW: 51028.8 Da PI: 6.6185 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G166500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 84 | 1.9e-26 | 118 | 212 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78
+Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++
Glyma.20G166500.1.p 118 KWTDKMVRLLITAVSYIGEDVTADGgssgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVEN 207
7******************99986445677888899**********************************************55888888 PP
trihelix 79 cpyfd 83
+++d
Glyma.20G166500.1.p 208 PALLD 212
87776 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 5.0E-24 | 116 | 241 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 446 aa
Download sequence Send
to blast |
MEGNLPQGGI IQGGTSFGGF DLPIRVQHQA QHPHTMHQHQ THPRQGSSVH STVHDGFPLT 60 MGTMQNCDQT ISLTDFSKGD RSKNSASEED EPSYTEDGVD CHHETTRGKK GSPWQRVKWT 120 DKMVRLLITA VSYIGEDVTA DGGSSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED 180 KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSEK EKDDVRKILS SKHLFYEEMC 240 SYHNGNRLHL PHDPALQRSL QLALRNRDDH DDDIRRSHHD DHDEDDQDAE IDDHDDFEEN 300 CASHGDSRGI YGPSGGSMKK LKQCQGQEDA NTFGKSLNCQ EYNKSSYPHG QMIQSDVNQG 360 LPEGMRAAWL QKQWVESHTL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKK DRELEKLSLE 420 NERMKLENER IALELKRKEM GTGFK*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-167 | sequence-specific DNA binding transcription factors |