PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G153000.1.p
Common NameGLYMA_20G153000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 194aa    MW: 21476.9 Da    PI: 7.0869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G153000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-082369654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          e+E++RR ++    + Lr+ lP  +    ++K s ++   +Av+YI+ L
  Glyma.20G153000.1.p 23 REVEKQRRTNMSILCASLRSSLPFeL---IKGKRSASDHIGEAVNYIQIL 69
                         699*********************78...******************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-111487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0581769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-51773No hitNo description
Gene3DG3DSA:4.10.280.104.5E-82285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-52369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAQENQHIIL VTSDNDERKI IRREVEKQRR TNMSILCASL RSSLPFELIK GKRSASDHIG  60
EAVNYIQILK QKINALQVKR DRLKLMVNSS LLETSIDQPE HSGAVVKCVN INLIPGGVEI  120
AICSSGLEEG SNSPLSEFME ILLQEGCDVV SCVSTLANGR IFHAIKCEVE ADLTRLDLAK  180
LQHKLDHAIL LPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G153000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556078.31e-138transcription factor bHLH36
RefseqXP_028221504.11e-138transcription factor bHLH36-like
TrEMBLA0A445F5C31e-137A0A445F5C3_GLYSO; Transcription factor bHLH120 isoform A
TrEMBLI1NGM81e-137I1NGM8_SOYBN; Uncharacterized protein
STRINGGLYMA20G29130.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.18e-28bHLH family protein