PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G103400.1.p
Common NameGLYMA_20G103400, LOC100800443
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 243aa    MW: 25768.9 Da    PI: 10.0992
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G103400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.75e-39282012118
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                          a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+++++tgt++++as++    s ss +s+s  +  
  Glyma.20G103400.1.p  28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSsV--SLSSPSSTS--Dyk 113
                          78*******************************************************************77731..222222222..133 PP

                  TCP  89 ..........................................................kaaksaakskksqksaasalnlakesraka 118
                                                                                    +aa++ +  + +q+++++a+ +a+++r+++
  Glyma.20G103400.1.p 114 pqllaptpfilgkrirtdedsskdeavsvgpslvgpyappgpgvvpawpdfgqiwsfvAAAAAPEMVSVPQQQQQQASLFAHHHRQQQ 201
                          5667778888888888888888889999999999999999999999999999999998444444455555555555577777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3434172IPR005333Transcription factor, TCP
PROSITE profilePS5136927.353488IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSNSDGTTNG AITEAQRQQQ QQGGKALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ  60
LTRELGHKSD GQTIEWLLRQ AEPSVIAATG TGTIPASFSS VSLSSPSSTS DYKPQLLAPT  120
PFILGKRIRT DEDSSKDEAV SVGPSLVGPY APPGPGVVPA WPDFGQIWSF VAAAAAPEMV  180
SVPQQQQQQA SLFAHHHRQQ QQLAIGEALA ARVGNYLPGH LNLLASLSGG PGNSGRRDDE  240
PR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G103400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605845.11e-177transcription factor TCP7
SwissprotQ9FMX22e-85TCP7_ARATH; Transcription factor TCP7
TrEMBLI1NF571e-175I1NF57_SOYBN; Uncharacterized protein
STRINGGLYMA20G23700.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-75TCP family protein