PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 285aa MW: 32167.9 Da PI: 6.9419

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G099400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.4e-22	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Glyma.20G099400.1.p 97 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	101.2	7.6e-33	96	158	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR++++ Glyma.20G099400.1.p 96 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRR 158 789**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-18	91	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	93	158	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	95	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-19	95	160	IPR009057	Homeodomain-like
CDD	cd00086	1.71E-14	97	158	No hit	No description
Pfam	PF00046	9.3E-20	97	157	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVNVVELQKQ LQRWQQSGNV NVNVNVDANG ELMYVKVMTD EQLETLRKQI AVYGTICEQL 60 IEMHRTLSAQ QDLAGVRLGN IYCDQLMTSG GHKITSRQRW TPTPVQLQIL ERIFDQGNGT 120 PSKEKIKEIT AELGQHGQIS ETNVYNWFQN RRARSKRRLQ NVAPSNTESE VDTEVDSKNK 180 KTKAEEEFQS QHNITTSGGA EKLCFQNPQV YSDHLHYLNP DSNKPYSMFQ SDCNLKSTRN 240 SSHVSVFNEM LSNSRSEYVG GKMEVGGSVS YNLFHQTGDC NLAG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41537	0.0	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G099400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555817.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-79	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0B2QNY0	0.0	A0A0B2QNY0_GLYSO; WUSCHEL-related homeobox 13
TrEMBL	K7N2N1	0.0	K7N2N1_SOYBN; Uncharacterized protein
STRING	GLYMA20G23220.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-82	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Glyma.20G099400.1.p
Entrez Gene	100817342

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]