PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G091200.1.p

Common Name

GLYMA_20G091200, Glyma20g22291.1, LOC100794974

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 723aa MW: 77247.9 Da PI: 6.3606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G091200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.3e-16	464	510	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Glyma.20G091200.1.p 464 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 510 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.53E-17	456	514	No hit	No description
SuperFamily	SSF47459	1.7E-20	457	520	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-20	457	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.349	460	509	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-13	464	510	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-17	466	515	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MPLYELYRLA REKLGKETTS TRAPDLCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK 60 SLPSHCLPSH CPKVRDKDVG YGTNTRMGKF GDLDSGLNEI PMSVPSREVD FCHDEDVLPW 120 LDYTSMDGSL QHEYGSDFLH ASNSFTLLDK KSNGNMAFRD SHKTSEEQGN VFKGSSAEQV 180 ETARPKASTS QLFPPSLHQC QTSFVSSRSR ASDITENNNT SNANQDVSYG EITHILSSSS 240 DLSSAKVQKC DPPITSNGSS STIMNFSHFA RPAAMVRANL QNIGLKSGLS SARSDSMEIK 300 NKGAAATSSN PPESILVDSS GECSKEPTMQ CQQVVEQSKP DVNSLQPKSV EQNAVPSKQS 360 EPASKESATK IDQTPNQVLG DSGTKGQTAA EKSMEPAVAS SSVCSGTGAD QGSDEPNQNL 420 KRKTKDTDDS ECHSEDVEEE SAGAKKTAGG QGGAGSKRSR AAEVHNLSER RRRDRINEKM 480 RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLYMPPMMLP AGMQHMHAPH 540 MAPFSPMGVG MHMGYGMGYG MGMPDMNGGS SRFPMIQVPQ MQGTHIPVAH MSGPTALHGM 600 ARSNPPGYGL PGQGYPMHMP PASVFPFSGG PLMNSPAQGL HARGSSGLVE TVDSASASGL 660 KDQMQNVDPQ VKQSTGGCDS TSQMPTQCEA AAVGFEQSAL AHSRGHASKA NDNGAVNPDP 720 GR*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MPLYELYRLA REKLGKETTS TRAPDLCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK  60
SLPSHCLPSH CPKVRDKDVG YGTNTRMGKF GDLDSGLNEI PMSVPSREVD FCHDEDVLPW  120
LDYTSMDGSL QHEYGSDFLH ASNSFTLLDK KSNGNMAFRD SHKTSEEQGN VFKGSSAEQV  180
ETARPKASTS QLFPPSLHQC QTSFVSSRSR ASDITENNNT SNANQDVSYG EITHILSSSS  240
DLSSAKVQKC DPPITSNGSS STIMNFSHFA RPAAMVRANL QNIGLKSGLS SARSDSMEIK  300
NKGAAATSSN PPESILVDSS GECSKEPTMQ CQQVVEQSKP DVNSLQPKSV EQNAVPSKQS  360
EPASKESATK IDQTPNQVLG DSGTKGQTAA EKSMEPAVAS SSVCSGTGAD QGSDEPNQNL  420
KRKTKDTDDS ECHSEDVEEE SAGAKKTAGG QGGAGSKRSR AAEVHNLSER RRRDRINEKM  480
RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLYMPPMMLP AGMQHMHAPH  540
MAPFSPMGVG MHMGYGMGYG MGMPDMNGGS SRFPMIQVPQ MQGTHIPVAH MSGPTALHGM  600
ARSNPPGYGL PGQGYPMHMP PASVFPFSGG PLMNSPAQGL HARGSSGLVE TVDSASASGL  660
KDQMQNVDPQ VKQSTGGCDS TSQMPTQCEA AAVGFEQSAL AHSRGHASKA NDNGAVNPDP  720
GR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	468	473	ERRRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25309	0.0	cotyledon

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G091200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031132	0.0	KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006605776.1	0.0	transcription factor PIF3
Refseq	XP_028221626.1	0.0	transcription factor PIF3-like
TrEMBL	A0A445F2L7	0.0	A0A445F2L7_GLYSO; Transcription factor PIF3
TrEMBL	K7N2G1	0.0	K7N2G1_SOYBN; BHLH transcription factor
STRING	GLYMA20G22291.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5271	33	53
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	7e-62	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Glyma.20G091200.1.p
Entrez Gene	100794974

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]