PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G088600.1.p | ||||||||
Common Name | GLYMA_20G088600, LOC100787583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24770.2 Da PI: 5.9224 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.4e-09 | 65 | 112 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+r+N++f L ++l + + + +K +iL A++ +++L Glyma.20G088600.1.p 65 SKACREKLRRERLNERFCDLSSVLEPG---RPVRTDKPAILDDAIRVLSQL 112 6778**********************8...89*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.22 | 61 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-6 | 65 | 117 | No hit | No description |
Pfam | PF00010 | 2.3E-6 | 65 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-7 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-11 | 67 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-9 | 69 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDSLEDSGCW DFLDYSFIDQ APPDFLWSNN NNSVSTEIDI PGDAVACQEN TKKRGRTDSC 60 FKAGSKACRE KLRRERLNER FCDLSSVLEP GRPVRTDKPA ILDDAIRVLS QLKTEAQELK 120 KTNEKLLEEI KCLKAEKNEL REEKLVLKAD KERIEKQLKA LPVAPAGFMA PPVAAAAAAY 180 QAGVNKMAVY PNYGYIPMWQ YLPQSVRDTS HDHELRPPAA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7248 | 0.0 | cotyledon| flower| leaf| root| somatic embryo| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G088600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094668 | 0.0 | BT094668.1 Soybean clone JCVI-FLGm-5P4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555760.1 | 1e-163 | transcription factor bHLH104 isoform X1 | ||||
Refseq | XP_028222876.1 | 1e-163 | transcription factor bHLH104-like isoform X1 | ||||
Swissprot | Q8L467 | 2e-75 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A445F2N9 | 1e-162 | A0A445F2N9_GLYSO; Transcription factor bHLH104 isoform A | ||||
TrEMBL | I1NER6 | 1e-162 | I1NER6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G22010.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 6e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G088600.1.p |
Entrez Gene | 100787583 |