PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G042000.1.p
Common NameGLYMA_20G042000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 272aa    MW: 31638.7 Da    PI: 7.1509
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G042000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k
  Glyma.20G042000.1.p  26 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAK 106
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.20G042000.1.p 107 HLLCEIHRRKA 117
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.54E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFTLDRFEE NMVFTLESQK SVPAPFLTKT YQLVDDPHTD HIVSWGEDET TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGAKHLLC EIHRRKAPQQ  120
HHQLFHDQSP SQIFQQDENL CWLDTPLPSP KPNTDILTAL SEDNQRLRRK NFMLLSELSH  180
MKSLYNDIIY FIQNHVKPPP FEQRSSSVIP NLVELDSLHE SPNDMGVRRS AKSCVVDKSL  240
ITSTEESNSS VKLFGFPLSG RKRLHPDNTN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-201611511120Heat shock factor protein 1
5d5u_B1e-202111525129Heat shock factor protein 1
5d5v_B1e-202111525129Heat shock factor protein 1
5d5v_D1e-202111525129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.367150.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G042000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969820.0BT096982.1 Soybean clone JCVI-FLGm-21M20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304342.20.0heat stress transcription factor B-4b-like
RefseqXP_028221226.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6351e-86HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0B2R0A20.0A0A0B2R0A2_GLYSO; Heat stress transcription factor B-4
TrEMBLI1NDX70.0I1NDX7_SOYBN; Uncharacterized protein
STRINGGLYMA20G08250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-89heat shock transcription factor B4