PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G009800.1.p | ||||||||
Common Name | GLYMA_20G009800, LOC100809323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 369aa MW: 41305.6 Da PI: 7.6738 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.5 | 9.6e-31 | 244 | 299 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a+e LGGs+ AtPk+i+elm v+gLt+++vkSHLQkYRl+ Glyma.20G009800.1.p 244 KQRRCWSPELHSRFIKALEVLGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLH 299 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-28 | 241 | 302 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.853 | 241 | 301 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.72E-17 | 242 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-25 | 244 | 299 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-7 | 246 | 297 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGLVVPEEEL SLDLRPSFVP KTITDFLCHL STTPNASHKV SLLDDFVHRL ELELAKIQAF 60 KRELPLCMFL LNDAISALKV ESEKCRACKS EPVFEEFIPL KKECDQRKEI EKEKECRDKK 120 NWMSSFQLWN NDDKADNNNN AYECDKKHNY RVENKNNGEK RKSVTKDLFQ YGRIRNGEKG 180 FVIPFSSYPA TKEEKEDCVA NGLSLQTPGT AVKSTREGSG CRTSSCRVGS SAPSPLHQPQ 240 SSRKQRRCWS PELHSRFIKA LEVLGGSQAA TPKQIRELMR VDGLTNDEVK SHLQKYRLHT 300 QRVPVATAAN FSRSAVDLGG LWMHNESLKG GSSGSPQGPL QLATQSGEAT SQTEGDNMID 360 DDDVKSDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-14 | 244 | 297 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 244 | 297 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 244 | 297 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 244 | 297 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-14 | 244 | 302 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37403 | 0.0 | flower| hypocotyl| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G009800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555716.1 | 0.0 | myb family transcription factor EFM isoform X1 | ||||
Refseq | XP_028222867.1 | 0.0 | myb family transcription factor EFM-like isoform X1 | ||||
TrEMBL | A0A0B2NUN9 | 0.0 | A0A0B2NUN9_GLYSO; Myb family transcription factor EFM isoform A | ||||
TrEMBL | I1ND35 | 0.0 | I1ND35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01260.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 | Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-53 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G009800.1.p |
Entrez Gene | 100809323 |