PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G008700.1.p | ||||||||
Common Name | GLYMA_20G008700, LOC100789352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 436aa MW: 49452.9 Da PI: 8.9669 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 8 | 96 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l+ + +l+s++l++p +f++++g + s+ tl+ ++g +W++ l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v+ Glyma.20G008700.1.p 8 KLVLPTTLQSRQLRIPDNFLRKYGTQ--LSTIATLTVPDGSVWRIGL--KKADNRILFVDGWQDFVQHYSIGVGYFLVFMYEGNSSF--IVH 93 555677888889***********966..9999***************..*************************************9..999 PP EE- CS B3 96 vfr 98 +f+ Glyma.20G008700.1.p 94 IFN 96 986 PP | |||||||
2 | B3 | 59.2 | 7.1e-19 | 301 | 392 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e l Glyma.20G008700.1.p 301 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVL 385 78899******************876743...59999999********665555..66************************99999999 PP EEEEE-S CS B3 93 vvkvfrk 99 v+vfr Glyma.20G008700.1.p 386 QVTVFRV 392 **99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-24 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-19 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-16 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-24 | 290 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 291 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-22 | 296 | 391 | No hit | No description |
SMART | SM01019 | 3.7E-19 | 298 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.099 | 298 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-17 | 301 | 391 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MPRPCFHKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWRI GLKKADNRIL 60 FVDGWQDFVQ HYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAIRN RNEGSCLANY 120 HHIFDEMEDV DSLDLSDLSP QYLTPGSLQN KGCVGSVDQL TPGKSHTPAL QNLFNGGSKL 180 NRINWGDGGS AFSSKNANSQ GNQSTRDIGV QFNANEFKRS TEELKLRYSN EETVNKTAKK 240 KRKSEPYGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV 300 VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE 360 FTVENNLGEG DVCVFELLRT KEVVLQVTVF RVTEDAGLLN QPPMMQQQHI PNMSHTKLLN 420 PHLQHRVSTT KLIRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-72 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-72 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G008700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555681.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_028222197.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-125 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0B2NPL0 | 0.0 | A0A0B2NPL0_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | I1ND23 | 0.0 | I1ND23_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 | Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-123 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G008700.1.p |
Entrez Gene | 100789352 |
Publications ? help Back to Top | |||
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