PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G006000.1.p
Common NameGLYMA_20G006000, LOC100796564
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 295aa    MW: 32972.5 Da    PI: 8.9783
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G006000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-321972255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtpeLH++Fv a+e LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Glyma.20G006000.1.p 19 PRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-311573IPR009057Homeodomain-like
PROSITE profilePS512949.9031575IPR017930Myb domain
SuperFamilySSF466892.15E-151773IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-231973IPR006447Myb domain, plants
PfamPF002492.1E-72071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGSCGREGVV RQYIRSKVPR LRWTPELHRC FVYAIETLGG HHKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMKGDSCRQ DRTSTQHRKQ SFQKHDEASD VGFHSCFKFI RKESDSLSGY  120
SNFSSKRTRI EKTSLLSGIL QCSQRICEAD PNPYTTFYDY LQSMAKEKGI KKICVGSIWQ  180
QTQPLSTTFH MLTKQESDLL QVAKLNDKQP LNEVGNTWRK GLGAENEDIG GCELSLSITL  240
PQPHPSSQKS NTSSVSETSE AFSLCPEFSN NVIMGCSSSS NVPKTINLDL SLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.40761e-91leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G006000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982253e-89BT098225.1 Soybean clone JCVI-FLGm-16F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605454.10.0putative Myb family transcription factor At1g14600
RefseqXP_028221169.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A0B2NPN10.0A0A0B2NPN1_GLYSO; Putative Myb family transcription factor
TrEMBLK7N0L30.0K7N0L3_SOYBN; Uncharacterized protein
STRINGGLYMA20G00861.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.14e-34G2-like family protein