PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G247600.6.p
Common NameGLYMA_19G247600, LOC100813604
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 384aa    MW: 42652.5 Da    PI: 4.8877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G247600.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.61.6e-34191245155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rWtpeLHe+Fveav+qLGGs+kAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Glyma.19G247600.6.p 191 KPRMRWTPELHEAFVEAVNQLGGSDKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 245
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.906188248IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-32189247IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18189245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25191245IPR006447Myb domain, plants
PfamPF002496.8E-10193244IPR001005SANT/Myb domain
PfamPF143793.0E-21278322IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSTSSRALPT PLENKYMKPP DSFQLSPVRD LTANSASSNS IRSAGKMLSS PSECPDDIPF  60
SFVSQTSGDN VSSEIHSTAL ISHPQDNEDL SWGPDPFQDI LGFPENVSVQ HDQVQNNGCY  120
INDDNVKRSD FGEWVDQLMS IDDSLHPNWS QLLGDDNVAE PKPKASHVPQ QQHIASVEVV  180
GNSASTAPQT KPRMRWTPEL HEAFVEAVNQ LGGSDKATPK GVLNLMKVEG LTIYHVKSHL  240
QKYRTARYKP EPSEGNSEKK VTPMEEMKSL DLKTSKGITE ALRLQMELQK RLHEQLEIQR  300
KLQIQIEDQG KRLQMMFEKQ GEMGDNKVNG SSDTNEEGDK FESIPKAMPE EKDSSTRKQI  360
AGEAEEVINE DEAAPPTKRV KSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-31191249260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291610.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G247600.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961720.0BT096172.1 Soybean clone JCVI-FLGm-25F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242015.20.0MYB-CC domain-containing transcription factor PHR33
RefseqNP_001348550.10.0MYB-CC domain-containing transcription factor PHR33
RefseqXP_006603738.10.0MYB-CC domain-containing transcription factor PHR33 isoform X2
RefseqXP_028218882.10.0protein PHR1-LIKE 1-like isoform X2
RefseqXP_028218883.10.0protein PHR1-LIKE 1-like isoform X2
RefseqXP_028218884.10.0protein PHR1-LIKE 1-like isoform X2
SwissprotQ8GUN59e-89PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A445FLF00.0A0A445FLF0_GLYSO; Protein PHR1-LIKE 1 isoform A
TrEMBLI1NCC40.0I1NCC4_SOYBN; Uncharacterized protein
STRINGGLYMA19G43690.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.23e-89G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]