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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.19G243500.1.p |
Common Name | GLYMA_19G243500, LOC100801868 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
Trihelix |
Protein Properties |
Length: 601aa MW: 68148.6 Da PI: 6.8689 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.19G243500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 45.9 | 1.5e-14 | 105 | 165 | 2 | 67 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67
Wt++evlaL ++r++me++l + W++vs++++e gf++s+++Ckek+e+ ++++ +i++
Glyma.19G243500.1.p 105 WTNDEVLALFRIRSSMENWLPEL-----TWDHVSRRLAEVGFKKSAEKCKEKFEDESRYFDNINNY 165
*******************9987.....9*******************************999875 PP
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2 | trihelix | 91.7 | 7.7e-29 | 459 | 544 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
rW+++evlaLi++r ++ ++ + k+plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql
Glyma.19G243500.1.p 459 RWPRDEVLALINLRCTSLSSNEEkEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQL 544
8*************988877776256899********************************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 601 aa
Download sequence Send
to blast |
MFDGAPDQFH QFIAPRTTLP LHLSFPLHHH ASSTPPPNTF LPFDPYNPSS HHLLPSLQTN 60 HLLHPPTTSP THKHEQDKVI APIVNNNEEI QRDQRQLPDQ LTDSWTNDEV LALFRIRSSM 120 ENWLPELTWD HVSRRLAEVG FKKSAEKCKE KFEDESRYFD NINNYGKNNF RFLISELEEL 180 CQNSDPGAHD HNGVVVRSEK THHLGGHALE ENSRDIETTT ATKRCDIGSD TVVEKSNSKV 240 RKRKRRDRFE MFKGFCESVV NKMMAQQEET HNKLLEDMVK RDQEKFAREE AWKKQELDRM 300 KKELEIMAQE QAIAGDRQAT IIEFLKKCAT TTITSLSPPS QNAKYYITND SNLPNCASHS 360 QNPNNPSNED NNLEPTPSSK MIQNHGQTTL GAENPSTSDT LLQVPSSSNS SPTTHNPSSS 420 LNSHNNIIPL ESNSVSTYKP TSTTPMASSE NSKDDIGRRW PRDEVLALIN LRCTSLSSNE 480 EKEGNKGPLW ERISQGMSAL GYKRSAKRCK EKWENINKYF RKTKDNVNKK RSLNSRTCPY 540 FHQLSCLYGQ GKIVPQSERE GNYCLNPTPN SGQVPPDDDH QVQDDESSQV GSAGLVQYAC 600 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 4e-96 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |