PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 519aa MW: 57383.2 Da PI: 8.8964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G222000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.7e-14	340	385	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn E++RR++iN+++ +L++l+P++ K++Ka++L A++Y+k L Glyma.19G222000.1.p 340 VHNLSEKKRREKINKKMRTLKDLIPNC-----NKVDKASMLDDAIDYLKTL 385 5***********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-18	334	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-15	334	390	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-17	334	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.682	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-12	340	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-16	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MMIQKMFDST RSGMTRSSSH VASINDNDFL ELVWENGEIV VRGGSSSNRS RKTNEERIHE 60 DASINKRTRL NPLYSLEDHF LPQRDSDMSS SHQSNNGQDS CQSSQSKNSC KLHEEFANLL 120 KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG 180 NSATQQTKNH SSPARVEEIE ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA 240 GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF 300 RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK 360 DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS GLWPLMMGFR PPQLPIPPLS 420 AITDNRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN 480 SLHGNATKLA PPSQISFQHH HTSTSTPTLA TPFIFPQK*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MMIQKMFDST RSGMTRSSSH VASINDNDFL ELVWENGEIV VRGGSSSNRS RKTNEERIHE  60
DASINKRTRL NPLYSLEDHF LPQRDSDMSS SHQSNNGQDS CQSSQSKNSC KLHEEFANLL  120
KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG  180
NSATQQTKNH SSPARVEEIE ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA  240
GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF  300
RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK  360
DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS GLWPLMMGFR PPQLPIPPLS  420
AITDNRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN  480
SLHGNATKLA PPSQISFQHH HTSTSTPTLA TPFIFPQK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	350	KKRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.1773	0.0	cotyledon\| leaf\| meristem\| seed coat

Function -- GeneRIF ? help Back to Top
PIF3-like gene in soybena is consistently upregulated in response to weed presence. [PIF3] [PMID: 25711503]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G222000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031129	0.0	KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340167.1	0.0	bHLH transcription factor PIF3
TrEMBL	I1NBJ2	0.0	I1NBJ2_SOYBN; BHLH transcription factor
STRING	GLYMA19G40980.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13329	18	29
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-27	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Glyma.19G222000.1.p
Entrez Gene	100784724

Publications ? help Back to Top
Horvath DP, et al. RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean. New Phytol., 2015. 207(1): p. 196-210 [PMID:25711503] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]