PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Glyma.19G190000.2.p

Common Name

GLYMA_19G190000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 404aa MW: 46548.9 Da PI: 6.795

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G190000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.4	1.1e-24	70	168	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+ +v++Li a+ +++++ ++++ +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++ Glyma.19G190000.2.p 70 KWTDTMVKLLIMAVYYIGDEAGSECtdptkkkasgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 159 7******************9988888889999999******************************************55999 PP trihelix 78 tcpyfdqle 86 + ++d ++ Glyma.19G190000.2.p 160 NQTLLDTMD 168 999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-21	68	193	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MVSYATHHDT DTHHQQQPPQ QPIKHGYNFS AIKSSKSQST LSDEDEPVFT AEDNSSGDPK 60 RKVSPWHRMK WTDTMVKLLI MAVYYIGDEA GSECTDPTKK KASGLLQKKG KWKSVSKGMM 120 EKGYYVSPQQ CEDKFNDLNK RYKRVNDILG KGTACRVVEN QTLLDTMDLS PKMKEEVRKL 180 LNSKHLFFRE MCAYHNSCGH NNNCGSTSNV QQSTEAQPPH QHQQQQCLHS SENGVGSLRM 240 LKEDEDEDDD SEEFSDEDEE ESGEGGSRGM EEDENDVIRR RARNKGGFGV SSSQMMQQLS 300 GEVSGVLQDG GKSAWEKKQW MKKRVVQLEE QQVSYQIQAF ELEKQRLKWA RFSSKKEREM 360 EKDKLQNERR RLEIERMVLL LRHRELELVN VQQQQHQQQH SST*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MVSYATHHDT DTHHQQQPPQ QPIKHGYNFS AIKSSKSQST LSDEDEPVFT AEDNSSGDPK  60
RKVSPWHRMK WTDTMVKLLI MAVYYIGDEA GSECTDPTKK KASGLLQKKG KWKSVSKGMM  120
EKGYYVSPQQ CEDKFNDLNK RYKRVNDILG KGTACRVVEN QTLLDTMDLS PKMKEEVRKL  180
LNSKHLFFRE MCAYHNSCGH NNNCGSTSNV QQSTEAQPPH QHQQQQCLHS SENGVGSLRM  240
LKEDEDEDDD SEEFSDEDEE ESGEGGSRGM EEDENDVIRR RARNKGGFGV SSSQMMQQLS  300
GEVSGVLQDG GKSAWEKKQW MKKRVVQLEE QQVSYQIQAF ELEKQRLKWA RFSSKKEREM  360
EKDKLQNERR RLEIERMVLL LRHRELELVN VQQQQHQQQH SST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G190000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097368	0.0	BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001336160.1	0.0	SHOOT2 protein
TrEMBL	A0A445FIK6	0.0	A0A445FIK6_GLYSO; Uncharacterized protein
TrEMBL	K7MZ59	0.0	K7MZ59_SOYBN; Uncharacterized protein
STRING	GLYMA19G37410.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-97	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Glyma.19G190000.2.p