PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G190000.1.p
Common NameGLYMA_19G190000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 453aa    MW: 51930.8 Da    PI: 6.7963
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G190000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.11.4e-24119217186
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                          +Wt+ +v++Li a+ +++++ ++++            +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Glyma.19G190000.1.p 119 KWTDTMVKLLIMAVYYIGDEAGSECtdptkkkasgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 208
                          7********************9988888889999999**********************************************55999** PP

             trihelix  78 tcpyfdqle 86 
                          +  ++d ++
  Glyma.19G190000.1.p 209 NQTLLDTMD 217
                          999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-21117242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLLG VENPLQPQQQ QQQPNLQNQR NPHPLHHPQM VSYATHHDTD  60
THHQQQPPQQ PIKHGYNFSA IKSSKSQSTL SDEDEPVFTA EDNSSGDPKR KVSPWHRMKW  120
TDTMVKLLIM AVYYIGDEAG SECTDPTKKK ASGLLQKKGK WKSVSKGMME KGYYVSPQQC  180
EDKFNDLNKR YKRVNDILGK GTACRVVENQ TLLDTMDLSP KMKEEVRKLL NSKHLFFREM  240
CAYHNSCGHN NNCGSTSNVQ QSTEAQPPHQ HQQQQCLHSS ENGVGSLRML KEDEDEDDDS  300
EEFSDEDEEE SGEGGSRGME EDENDVIRRR ARNKGGFGVS SSQMMQQLSG EVSGVLQDGG  360
KSAWEKKQWM KKRVVQLEEQ QVSYQIQAFE LEKQRLKWAR FSSKKEREME KDKLQNERRR  420
LEIERMVLLL RHRELELVNV QQQQHQQQHS ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G190000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973680.0BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336160.10.0SHOOT2 protein
TrEMBLA0A445FIH60.0A0A445FIH6_GLYSO; Uncharacterized protein
TrEMBLI1NAH60.0I1NAH6_SOYBN; Uncharacterized protein
STRINGGLYMA19G37410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-96sequence-specific DNA binding transcription factors