PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G186200.1.p | ||||||||
Common Name | GLYMA_19G186200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 40042.3 Da PI: 8.3789 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 264 | 286 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Glyma.19G186200.1.p 264 HECSICGAEFSSGQALGGHMRKH 286 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.97E-8 | 172 | 195 | No hit | No description |
Pfam | PF13912 | 2.6E-10 | 173 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.97E-8 | 259 | 286 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 262 | 286 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-12 | 263 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 264 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0087 | 264 | 286 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGLLQSQPNL TRFLASSCLT LHLSLSLSSL HTCNIRLPSL ETQLWQTQNT LLAIRGAIIY 60 ISFHSLHCFF HSLFTMQKQE ELHAVCKDYM QIIKGKRTKR QRLPSPLRLT MSTTCSSLGR 120 SSTDNSVGFD IPTTSNESRN EEEDMANCLI LLAQGHNNTP KPSRTNKGGL YLYECKTCNR 180 CFPSFQALGG HRASHKKYSK ASAEEKQGVA TTFVNYEVDN NNNNHNHDDY CDPTSTPLTL 240 QLSTALYNNS SSIRSTINAK AKVHECSICG AEFSSGQALG GHMRKHRNFL SAPIIGAINI 300 ANGGDGSPKV PEAKKHKDVL NLDLNLPAPE DDHLRESNLF PFQAKEKVIV FSATSLVDCH 360 Y* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52367 | 1e-156 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G186200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967127 | 0.0 | KC967127.1 Glycine max C2H2-type zinc finger protein 6 (ZFP6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217850.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A445FID4 | 0.0 | A0A445FID4_GLYSO; Zinc finger protein ZAT5 | ||||
TrEMBL | K7MZ35 | 0.0 | K7MZ35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G37010.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 4e-48 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G186200.1.p |