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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G178200.3.p |
| Common Name | GLYMA_19G178200, LOC100797238 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
AP2 |
| Protein Properties |
Length: 459aa MW: 50314.7 Da PI: 6.7425 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G178200.3.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 52.2 | 1.5e-16 | 123 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Glyma.19G178200.3.p 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHVAARAYDRAAIKFRG 172
78*******************......55************************997 PP
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| 2 | AP2 | 42 | 2.3e-13 | 215 | 265 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Glyma.19G178200.3.p 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 265
89********.7******5553..2.26**********99**********99776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MLDLNLNADS ASDLQMESSG SFNSSVVNAA DTDDSCSYGD AVAYNFAILN NAATSDGLPL 60
GAAGEPSVRT IQLFPAADSG ASAAAWLDFS SKVDQHGAPP EQRITPRQQQ VKKSRRGPRS 120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHVAA RAYDRAAIKF RGVDADINFN 180
VSDYDEDIKQ MSNFTKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 240
IYLGLFDSEL EAARAYDKAA IKCNGREAVT NFEPSLYEGE VISQSDNEDT KQSLDLNLGI 300
APPSYSDGQI KNTPSNGSGM IAPQSWDDIP LDKRVMFEHS GSRSRTIQPP HHGFSIASGQ 360
HPSVWNGSNF FPIYEETAIE KRMEAAPVPN WAWQVQGPYG RATLAPPFST AASSGFPSTI 420
IPSAADTQIR FPNMTFLHSH FPSSITNSGT ISPFFFGS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-98 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
