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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G178200.2.p |
| Common Name | GLYMA_19G178200, LOC100797238 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
AP2 |
| Protein Properties |
Length: 489aa MW: 53726.7 Da PI: 8.3041 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G178200.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 52.1 | 1.6e-16 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Glyma.19G178200.2.p 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHVAARAYDRAAIKFRG 202
78*******************......55************************997 PP
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| 2 | AP2 | 41.9 | 2.5e-13 | 245 | 295 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Glyma.19G178200.2.p 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 295
89********.7******5553..2.26**********99**********99776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MALRRLRRNL ALSIPRRQSP EASTKQTHAA MLDLNLNADS ASDLQMESSG SFNSSVVNAA 60
DTDDSCSYGD AVAYNFAILN NAATSDGLPL GAAGEPSVRT IQLFPAADSG ASAAAWLDFS 120
SKVDQHGAPP EQRITPRQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180
GGFDTAHVAA RAYDRAAIKF RGVDADINFN VSDYDEDIKQ MSNFTKEEFV HILRRQSTGF 240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEL EAARAYDKAA IKCNGREAVT 300
NFEPSLYEGE VISQSDNEDT KQSLDLNLGI APPSYSDGQI KNTPSNGSGM IAPQSWDDIP 360
LDKRVMFEHS GSRSRTIQPP HHGFSIASGQ HPSVWNGSNF FPIYEETAIE KRMEAAPVPN 420
WAWQVQGPYG RATLAPPFST AASSGFPSTI IPSAADTQIR FPNMTFLHSH FPSSITNSGT 480
ISPFFFGS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-98 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
