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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.19G178200.1.p |
| Common Name | GLYMA_19G178200, LOC100797238 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
AP2 |
| Protein Properties |
Length: 495aa MW: 54330.3 Da PI: 8.0195 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G178200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 52.1 | 1.7e-16 | 159 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Glyma.19G178200.1.p 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHVAARAYDRAAIKFRG 208
78*******************......55************************997 PP
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| 2 | AP2 | 41.9 | 2.6e-13 | 251 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Glyma.19G178200.1.p 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAIKCNG 301
89********.7******5553..2.26**********99**********99776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 495 aa
Download sequence Send
to blast |
MALRRLRRNL ALSIPRRQSP EGDLFNGAST KQTHAAMLDL NLNADSASDL QMESSGSFNS 60
SVVNAADTDD SCSYGDAVAY NFAILNNAAT SDGLPLGAAG EPSVRTIQLF PAADSGASAA 120
AWLDFSSKVD QHGAPPEQRI TPRQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180
GKQVYLGGFD TAHVAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQMSNF TKEEFVHILR 240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSELEAAR AYDKAAIKCN 300
GREAVTNFEP SLYEGEVISQ SDNEDTKQSL DLNLGIAPPS YSDGQIKNTP SNGSGMIAPQ 360
SWDDIPLDKR VMFEHSGSRS RTIQPPHHGF SIASGQHPSV WNGSNFFPIY EETAIEKRME 420
AAPVPNWAWQ VQGPYGRATL APPFSTAASS GFPSTIIPSA ADTQIRFPNM TFLHSHFPSS 480
ITNSGTISPF FFGS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-98 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
