PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G174200.1.p
Common NameGLYMA_19G174200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 156aa    MW: 17348.2 Da    PI: 9.202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00124466123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs+   L  H  +H
  Glyma.19G174200.1.p 44 FECKTCSRKFSSFQALGGHRASH 66
                         89**********99999998887 PP
2zf-C2H2130.0003192114123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs    L  H+r+H
  Glyma.19G174200.1.p  92 HECSICGLEFSLGQALGGHMRKH 114
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6374471IPR007087Zinc finger, C2H2
PfamPF139121.4E-104468IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-844114No hitNo description
SMARTSM003550.44466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139128.9E-1092116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1292114IPR007087Zinc finger, C2H2
SMARTSM003550.1592114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MLGMKRHRDN EGSESLDLAK CLVLFSCPIE SNKAQQKGFG AVEFECKTCS RKFSSFQALG  60
GHRASHKRQK LEGEELKEQA KTLSLWNKPK MHECSICGLE FSLGQALGGH MRKHRAALNE  120
GFPIIPSIDQ VIAKIPVLKR SNSTRVMCLD LELHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.177360.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353150.0AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236732.21e-111C2H2-type zinc finger protein
RefseqXP_028218186.11e-111zinc finger protein ZAT11-like
TrEMBLA0A0R0EZJ51e-110A0A0R0EZJ5_SOYBN; Uncharacterized protein
TrEMBLA0A445FHY01e-110A0A445FHY0_GLYSO; Zinc finger protein ZAT11
STRINGGLYMA19G35770.21e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-34C2H2 family protein