PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G174100.1.p | ||||||||
Common Name | GLYMA_19G174100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 87aa MW: 9732.2 Da PI: 10.6171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.0004 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Glyma.19G174100.1.p 34 FECKTCNRKFTSFQALGGHRASH 56 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.2E-4 | 31 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.41E-5 | 32 | 57 | No hit | No description |
Pfam | PF13912 | 9.0E-12 | 33 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MKRHRESEEV KSIVTSVCLK MLSQAGDSPT REVFECKTCN RKFTSFQALG GHRASHKSLS 60 GSGTGRPHEK THRRVFIFFY KLGSCI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G174100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235315 | 1e-144 | AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520631.1 | 3e-21 | zinc finger protein ZAT11 | ||||
Refseq | XP_028223819.1 | 3e-21 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A445FHX1 | 3e-56 | A0A445FHX1_GLYSO; Zinc finger protein ZAT11 | ||||
TrEMBL | K7MYV9 | 3e-56 | K7MYV9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G35755.1 | 6e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G174100.1.p |