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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Glyma.19G144200.1.p | ||||||||
| Common Name | GLYMA_19G144200, LOC100796534 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | bHLH | ||||||||
| Protein Properties | Length: 384aa MW: 42213.7 Da PI: 9.789 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 42.4 | 1.2e-13 | 311 | 356 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+++Er RR+ri +++ +L+el+P+ +k s ae+L +Av+YIk+Lq
Glyma.19G144200.1.p 311 SIAERVRRSRISERIRKLQELVPNM----DKQTSTAEMLDLAVDYIKDLQ 356
689*********************7....688*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.942 | 305 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.84E-16 | 308 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.55E-5 | 309 | 358 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 310 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.1E-12 | 311 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.2E-10 | 311 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 384 aa Download sequence Send to blast |
MDSNSRYQVQ QQHQHNSGLL RFRSAPPANL KQQGEAANNN GSAWEGSEPL LRFLNSGDTH 60 DTTSSPTLRE FVDNKVSNNS KPAKESSSPL SRMNSQQGYS TSMLPSRSTV TSAMMLGSMG 120 KNQSAKSFDS NLLRQSSFPA GHFSNNISFQ NGYDTMKGVG NYSGVNGNDG ELSLSMNRMK 180 NQISFSSISP SSSLGVLSPT SKIGTEGIRV TSTEDGRQGG SNGDARYFGP GFSYASWNEP 240 SHHKRQRSSN DELLSDSQDG ELGNQVQTLS HHLSLPRTSS DMFAMDSLLQ FSDSVPCKIR 300 AKRGFATHPR SIAERVRRSR ISERIRKLQE LVPNMDKQTS TAEMLDLAVD YIKDLQKEFK 360 TLNDKRAKCK CINMQKSEAD QVA* |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Gma.54330 | 0.0 | cotyledon| root| stem | ||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.19G144200.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_003554190.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
| Refseq | XP_014627622.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
| Refseq | XP_014627623.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
| Refseq | XP_014627624.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
| Refseq | XP_014627625.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
| Refseq | XP_028218855.1 | 0.0 | transcription factor bHLH130-like | ||||
| Refseq | XP_028218856.1 | 0.0 | transcription factor bHLH130-like | ||||
| Refseq | XP_028218857.1 | 0.0 | transcription factor bHLH130-like | ||||
| Refseq | XP_028218858.1 | 0.0 | transcription factor bHLH130-like | ||||
| Refseq | XP_028218859.1 | 0.0 | transcription factor bHLH130-like | ||||
| TrEMBL | A0A0B2R3B4 | 0.0 | A0A0B2R3B4_GLYSO; Transcription factor bHLH130 | ||||
| TrEMBL | I1N948 | 0.0 | I1N948_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA19G32600.3 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5177 | 32 | 53 |
| Representative plant | OGRP511 | 15 | 80 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G42280.1 | 1e-60 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.19G144200.1.p |
| Entrez Gene | 100796534 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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