PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G138000.1.p
Common NameGLYMA_19G138000, LOC100786651
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 419aa    MW: 46518.1 Da    PI: 9.0566
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G138000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-1760119155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Glyma.19G138000.1.p  60 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 119
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-1760128IPR016177DNA-binding domain
PfamPF008476.3E-1360119IPR001471AP2/ERF domain
PROSITE profilePS5103220.12661127IPR001471AP2/ERF domain
SMARTSM003801.9E-2561133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1561128IPR001471AP2/ERF domain
PRINTSPR003674.1E-56273IPR001471AP2/ERF domain
PRINTSPR003674.1E-5109129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEAAVV VANDQLLLYR GLKKAKKERG CTAKERISKM PPCAAGKRSS  60
IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY DLAALKYWGP  120
GTLINFPVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG LAKYRGLSSR WDPSYGRMSG  180
SDYFNSMHYG AGDDSAAESE YVSGFCIERK IDLTSHIKWW GSNKSRHSDA GTRLSEEKKL  240
GSAGDICIEI KQLEQKVQPT APYQMPQLGR PQNEKKHRSS SVSALSILSQ SAAYKSLQEK  300
ASKTLENIID NDENENKNTI NKLDHGKAVE KPSNHDGGND RLDIATGMSG TMSLQRNVYP  360
LTPFLSAPLL TAYNTVDPLV DPVLWTSLVP MLPAGLSHTA EVTKTETSST YTMFRPEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.390060.0meristem| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G138000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310740.0KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554171.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
RefseqXP_028216870.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-170AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A445FG490.0A0A445FG49_GLYSO; AP2-like ethylene-responsive transcription factor isoform B
TrEMBLI1N8Z80.0I1N8Z8_SOYBN; Uncharacterized protein
STRINGGLYMA19G31960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-156AP2 family protein