PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G132500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 241aa    MW: 27397.1 Da    PI: 7.1451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G132500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-1462114155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ +hn+ Er RR++iN+  + Lr+llP a   + kK+s  +++ ++++YI +Lq
  Glyma.19G132500.1.p  62 KKLSHNASERDRRKKINNLVSSLRSLLPVA--DQTKKMSIPATVSRVIKYIPELQ 114
                          6789*************************6..48888***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.51361113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.76E-1362118No hitNo description
Gene3DG3DSA:4.10.280.102.2E-1362127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1162114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1662132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1167119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVALFSPPVF STKGWLLEEE PLSYDVSSEY SFPYQFYSPQ TQIEVEIESS TAPSPDDPAM  60
VKKLSHNASE RDRRKKINNL VSSLRSLLPV ADQTKKMSIP ATVSRVIKYI PELQQQVQSL  120
TKKKEVLLWR ISRQLQGDAV NKESQRKISQ HNSEFVVSTS RLNDCEVVVH ISYEAQKAPL  180
SEILHCLENN GLYLLNGSSS ETFGGRAFHN LHFQVEKTQR LESEILTENL LSIYQNQRIL  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.354900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G132500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311010.0KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217758.11e-176transcription factor ORG3-like
TrEMBLA0A368UHP11e-176A0A368UHP1_SOYBN; Uncharacterized protein
STRINGGLYMA03G28630.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-49bHLH family protein