PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G128900.1.p
Common NameGLYMA_19G128900, LOC100802566
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 252aa    MW: 28249.8 Da    PI: 8.8688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G128900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-1376122354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR+riNs ++ Lr+llP +      K +Ka+ L k+v+ +k+L
  Glyma.19G128900.1.p  76 KNHKEAEKRRRERINSHLDHLRTLLPCN-----SKTDKASLLAKVVQRVKEL 122
                          58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.45973122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-1176122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-1276125No hitNo description
SuperFamilySSF474596.41E-1477133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1377131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.4E-4166219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MHHFAMDNSH LLQFLPNTTT TTTTTNTPFF HAAPHTHTMH HPLSTNSSNN TNYYPFHLSQ  60
ITETPSHHDR ALAAMKNHKE AEKRRRERIN SHLDHLRTLL PCNSKTDKAS LLAKVVQRVK  120
ELKQQTSEIT ELETVPSETD EITVLSTTGG DYASGGGDGR LIFKASLCCE DRSDLIPDLI  180
EILNSLHLKT LKAEMATLGG RTRNVLVVAA DKEHSIESIH FLQNSLRSIL DRSSSGDRSK  240
RRRGLDRRLM S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223040.0meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G128900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554115.10.0transcription factor bHLH106
SwissprotO806746e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLI1N8Q50.0I1N8Q5_SOYBN; Uncharacterized protein
STRINGGLYMA19G30910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]