PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G110200.1.p
Common NameGLYMA_19G110200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 275aa    MW: 30613.6 Da    PI: 6.3541
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G110200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17201235135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Glyma.19G110200.1.p 201 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 235
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.358195231IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-13195249IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14198259No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13199233IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.46E-12200247No hitNo description
PfamPF003203.2E-15201235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNMDMCQNVS VSGECQQVQV FAPSCSSSLD DLFSAQNTEV DVELEWLSEF VEDCFSSPPS  60
CVLVPIGVKT TSTSTNLSSG TLKRPQQQNE SPLQNFAVPG KARSKRKRLS APRTNKDPLN  120
IWSHHLNPQN ESLCSDPPLL KQAYWLADSE LIMPKPKDEE QEEVVTKEDE KVINVMSKES  180
FGDSELEEGS NGQQPMPTRR CSHCLAQRTP QWRAGPLGPK TLCNACGVRY KSGRLLPEYR  240
PAKSPTFVSY LHSNSHKKVM EMRMAVFSTI SSEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.459180.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G110200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935010.0BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216286.10.0GATA transcription factor 5-like
TrEMBLI1N8690.0I1N869_SOYBN; Uncharacterized protein
STRINGGLYMA19G28650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-41GATA transcription factor 9