PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G055800.1.p
Common NameGLYMA_19G055800, LOC100819471
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 274aa    MW: 31414.4 Da    PI: 6.77
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G055800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
  Glyma.19G055800.1.p 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding51.81.9e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  Glyma.19G055800.1.p  67 RGGFTEMEEDQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                          788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466891.95E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002497.7E-121461IPR001005SANT/Myb domain
CDDcd001672.20E-41661No hitNo description
PROSITE profilePS5129423.7962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1467110IPR001005SANT/Myb domain
CDDcd001674.86E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEEDQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT KIKKRLKLLG  120
LDPLTLKPSE QKEKSVDDKK NIELQPNTSK GSEQGVENKS LDMHSTREVP KTEGKIEENK  180
VTWDDTTGFF NNYEMLCSQL DLGSWMSQET KTSTSSYCSS SFSLDDSSNL SVGESSYLQE  240
NSLQQWVDGL DSILSWDSFN PLEKDFLFLD NRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.390550.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G055800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-145AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555012.10.0myb-related protein 315
TrEMBLA0A445FCN20.0A0A445FCN2_GLYSO; Myb-related protein 315
TrEMBLI1N6Y90.0I1N6Y9_SOYBN; Uncharacterized protein
STRINGGLYMA19G07830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-77myb domain protein 40