PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G049400.1.p
Common NameGLYMA_19G049400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 367aa    MW: 41962.1 Da    PI: 6.0951
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G049400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.5e-25231284155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+ W  eLH +Fv+av ++ G +kA Pk+ile+m+++gLt +hv+SHLQkYR 
  Glyma.19G049400.1.p 231 KPRIAWKGELHCQFVKAVMHI-GLDKAQPKKILEVMNIPGLTKDHVASHLQKYRF 284
                          79*******************.********************************6 PP
2Response_reg77.45e-26671731107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          v+ vdD+ +++e+++q+  k +y +va+++d+++al+++ e++  +D+il+D+ +p+mdG+e+lk+i++e  ++p+i+++  g+ + + +
  Glyma.19G049400.1.p  67 VVAVDDDTTILEIIKQMGFKCHY-RVATFSDAPDALNYVLENKdrIDVILVDVHLPNMDGYEFLKHINKEI-DIPVIIMSVDGSTSAVRK 154
                          5679*******************.***************665557**********************8877.9***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                          a+  Ga d+ +Kpf++++ 
  Glyma.19G049400.1.p 155 AITHGACDYWTKPFSENQF 173
                          **************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.97E-2964182IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.3E-3365196No hitNo description
SMARTSM004486.7E-2465177IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.34566181IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2267173IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.92E-2570181No hitNo description
SuperFamilySSF466899.32E-16228288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-25229288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-21231284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVVAIKVLHD GFVRMEQMKR EIESMLVEMD CTKMILDSRQ RIVEYWVFTV EKSKVSSNHF  60
FVGGLWVVAV DDDTTILEII KQMGFKCHYR VATFSDAPDA LNYVLENKDR IDVILVDVHL  120
PNMDGYEFLK HINKEIDIPV IIMSVDGSTS AVRKAITHGA CDYWTKPFSE NQFKIMWKHV  180
AMKAWNEKKL QKKDFSEFAS SVLDANLKDQ KEISSNSKES DVDDCDAQPK KPRIAWKGEL  240
HCQFVKAVMH IGLDKAQPKK ILEVMNIPGL TKDHVASHLQ KYRFDLKKSN EVAVQQNEMQ  300
LPNSIQSTEP IDWFNPEGWT SQPDESILES VSVQSQNQQQ GGGSLHVLPP PLDGFRIQTD  360
WCNMNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16230288462ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G049400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554991.10.0two-component response regulator ORR21
RefseqXP_028217351.10.0two-component response regulator ORR21-like
TrEMBLA0A0R0EI420.0A0A0R0EI42_SOYBN; Uncharacterized protein
STRINGGLYMA19G06751.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-60response regulator 2