PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G046300.1.p | ||||||||
Common Name | GLYMA_19G046300, LOC100786490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 31811.1 Da PI: 7.4071 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.6 | 6.1e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ Glyma.19G046300.1.p 4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPESLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallk 98 ql+q+++e+ l + Glyma.19G046300.1.p 94 QLCQAAVEAILKG 106 ******9987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 2.4E-96 | 1 | 292 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.059 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPES 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAILKGEPIT PITSEAAANG 120 RAPPLKAYDI RHVSKDENSA NETPKAKTRS RFNRTGSTLI KPKASKGTPT GFVPIEPVEP 180 ETANRTTSHE SGLSHLSEAA VMVEGESKES ESDVSVETSN LFHEEPESVA KTSDRTGESG 240 NEIGLELTLG FEPVSRVHHV VPMKKRKIIA SKSYGDSAEK DSCKMELGLE YPA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G046300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555129.1 | 0.0 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-110 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | I1N6Q1 | 0.0 | I1N6Q1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G06280.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-103 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G046300.1.p |
Entrez Gene | 100786490 |