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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.19G030900.1.p |
Common Name | GLYMA_19G0309001, LOC100803100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
TCP |
Protein Properties |
Length: 375aa MW: 41358 Da PI: 8.079 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.19G030900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 100.1 | 4.1e-31 | 51 | 180 | 2 | 109 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82
g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++s s ++
Glyma.19G030900.1.p 51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvscNEVSTSREG 140
689*************************************************************88888666654433311333333333 PP
TCP 83 snsssg..........................kaaksaakskksqksaasaln 109
s g + + ++++++ ++n
Glyma.19G030900.1.p 141 S----GqntllwkpkpgeimvsdhdkanwmnrR--------EGDDDDDN-NHN 180
3....1235577777777777654322222210........22222222.122 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MINSTKETDF PLKQEGLSSS DHEKAKAPSS SSSSQWLKLK DPRIVRVSRA FGGKDRHSKV 60 CTIRGLRDRR VRLSVPTAIH LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN 120 FTLGYPSLVS CNEVSTSREG SGQNTLLWKP KPGEIMVSDH DKANWMNRRE GDDDDDNNHN 180 NSNGDKQGSN NNCHGGALVL PNNLLPTRPN HPSFLGLMNT MPSLGYQWEP NSSAADVNVQ 240 WQNHGFFNQT DVHSIDVVPF PSTLALSTGN STSTTTTSQI LVCPPPPGAT TQPYFPSSHF 300 ATMEMNARQI NHYQMLSSSS HQNLLANSLN HPSSQQLMSQ SGKAPFSLRI RPKLFHSPNS 360 SESHSQKDQD FPSK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015044 | 1e-143 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |