PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 386aa MW: 41961.7 Da PI: 4.6951

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G023200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	121	180	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ Glyma.19G023200.1.p 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGVMRNVPVGAGRRKNKNF 180 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	111	178	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-32	123	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	125	179	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	127	163	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MLESKDSTMK LFGKTIPAPE ISAGAPALSS GDADAVGVVQ NHGSSSVNGD GEEHEIEQDI 60 MGEETTESEK EDEVTNLDTV SRPGEVSINP STKKEDLTLK TSKKTEQEQG ENSQDKTLRK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGVMRNVPV GAGRRKNKNF 180 TSQYRQITVP EAALLSSQPD LPNGVSHPSL NCNATLLAFG SDTPLCESMT SVLNLAEKAV 240 NNSTTNGFNG SEELEIPFAY VAGEKVNDDS NKSSDMSTKP MEGETTNRSQ EQVIENCHPF 300 PPHAPYFPGA PWPFPWNPAL WNSPVPSPPA FFPQGFTMPL YPAAAYWGLT IPGAWSIPWL 360 AQPSLPNSTV SNSGPDPIAR TIAMS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MLESKDSTMK LFGKTIPAPE ISAGAPALSS GDADAVGVVQ NHGSSSVNGD GEEHEIEQDI  60
MGEETTESEK EDEVTNLDTV SRPGEVSINP STKKEDLTLK TSKKTEQEQG ENSQDKTLRK  120
PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGVMRNVPV GAGRRKNKNF  180
TSQYRQITVP EAALLSSQPD LPNGVSHPSL NCNATLLAFG SDTPLCESMT SVLNLAEKAV  240
NNSTTNGFNG SEELEIPFAY VAGEKVNDDS NKSSDMSTKP MEGETTNRSQ EQVIENCHPF  300
PPHAPYFPGA PWPFPWNPAL WNSPVPSPPA FFPQGFTMPL YPAAAYWGLT IPGAWSIPWL  360
AQPSLPNSTV SNSGPDPIAR TIAMS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.18486	0.0	hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G023200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031147	0.0	KT031147.1 Glycine max clone HN_CCL_144 C2C2-Zn Dof transcription factor (Glyma19g02710.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236866.2	0.0	C2C2-Zn Dof transcription factor
Refseq	XP_028216461.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A445FBB2	0.0	A0A445FBB2_GLYSO; Cyclic dof factor 2
TrEMBL	I1N654	0.0	I1N654_SOYBN; C2C2-Zn Dof transcription factor
STRING	GLYMA19G02710.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF36653	2	2
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-62	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Glyma.19G023200.1.p
Entrez Gene	778120

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]