PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G287200.1.p | ||||||||
Common Name | GLYMA_18G287200, LOC100781134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 19353.9 Da PI: 9.0275 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Glyma.18G287200.1.p 39 FECKTCNRQFPSFQALGGHRASH 61 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-8 | 37 | 108 | No hit | No description |
Pfam | PF13912 | 2.8E-13 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.1E-10 | 85 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKREREVDSL TMANCLMLLS RGSEFEATYS STSMSNRVFE CKTCNRQFPS FQALGGHRAS 60 HKKPRLMAGD IEGQLLHDSP PKPKTHECSI CGLEFAIGQA LGGHMRRHRA ANLNGNVHNS 120 TATSSSSGGS SFDSSPKKKA DNKRVLVLDL NLTPFENDLE FLKIGKPTTF VDYLY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26974 | 0.0 | flower| hypocotyl| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G287200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091295 | 0.0 | BT091295.1 Soybean clone JCVI-FLGm-7L1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552680.1 | 1e-129 | zinc finger protein ZAT11 | ||||
Refseq | XP_028213105.1 | 1e-129 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A445FYY0 | 1e-128 | A0A445FYY0_GLYSO; Zinc finger protein ZAT11 | ||||
TrEMBL | I1N534 | 1e-128 | I1N534_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G52410.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G287200.1.p |
Entrez Gene | 100781134 |