PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G246200.1.p
Common NameGLYMA_18G246200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 326aa    MW: 37071.8 Da    PI: 9.4404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10140187355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r h  +Er+RR+++N+++  L   +        kK +Ka ++++Av+Y+k+L+
  Glyma.18G246200.1.p 140 RVHILAERKRREELNKSIVALSATILGF-----KKTDKANVVREAVKYVKQLE 187
                          56999**********************8.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-13137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.081137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-8138190No hitNo description
Gene3DG3DSA:4.10.280.101.0E-11141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-8141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIKRFSFQVL PRSYVPKPPY MLIMENSWMD LLSQWETDDD DLFINQSHVI SFNEAKSPKG  60
MIFQQQVFSP KSKPSSSSSS SSSFLQSNLK SCSSFSTGGY VLSFDNNHIV EPRYPQNPFS  120
KSVAQSHCVE PKAFPRTRPR VHILAERKRR EELNKSIVAL SATILGFKKT DKANVVREAV  180
KYVKQLEERV NELENQKRKE GVNSIILTKK TPLSINNIDQ AITHGCVDVE EEILELKVTV  240
LDKELLIGIY SEKQRQTMLK ILSLLDDLHL SITPLSITPT SVLPFGTSTL KITIIAQMDD  300
EYNMIIHDLV KALRQRILKS QDMQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212147.10.0transcription factor bHLH25-like
TrEMBLA0A0R0FFK30.0A0A0R0FFK3_SOYBN; Uncharacterized protein
STRINGGLYMA18G48143.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1872846
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-33bHLH family protein