PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G202400.1.p
Common NameGLYMA_18G202400, LOC100794230
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 293aa    MW: 34911.4 Da    PI: 7.4212
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G202400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.8e-2536118186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+ qe+++ + +r e+++++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  Glyma.18G202400.1.p  36 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 118
                          7********************************************************************95...56689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.96E-2235100No hitNo description
PfamPF138372.5E-2036120No hitNo description
PROSITE profilePS500907.3173793IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGHHLHHRQ QQLQQHHHPH HNITTSNVDA TDRFPQWSIQ ETKEFLVIRA ELDQTFMETK  60
RNKQLWEVIS NRMKEKGFHR SAEQCKCKWK NLVTRYKGCE TMEPEAMRQQ FPFYNELQAI  120
FAARMQRMLW AEAEGGSNNK KKGMHLSSDD EEEGNEEMMS EGDHKGNIII SKKNKKKGKM  180
VIGVGGSGNN NNNSSSSSNN LESLKEIMDE FMRQQMQMEA QWMEAFEARE NERRLKEMEW  240
RQTMEALENE RLMMDQRWRE REEQRRIREE VRADKRDALI TALLNKLRRE EM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G202400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-103AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551560.10.0trihelix transcription factor GT-3b
SwissprotQ9SDW05e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLK7MTJ90.0K7MTJ9_SOYBN; Uncharacterized protein
STRINGGLYMA18G43190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-56Trihelix family protein