PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G148000.1.p | ||||||||
Common Name | GLYMA_18G148000, LOC100795280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 440aa MW: 48377.9 Da PI: 8.6274 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 159 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Glyma.18G148000.1.p 159 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 218 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 49.5 | 1.1e-15 | 262 | 312 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Glyma.18G148000.1.p 262 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 312 69***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.67E-21 | 159 | 228 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-17 | 159 | 228 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-11 | 159 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-28 | 160 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.243 | 160 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-16 | 160 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 161 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-23 | 261 | 320 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 261 | 321 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-30 | 262 | 326 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-10 | 262 | 312 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 262 | 320 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 262 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MAGATKNWLT FSLTPMETQF GPYDITTPSH CFNDNNFYGW ANSKGVMDSQ SETQQLAVPK 60 MEDFYFGDHQ QDLKAIVPGF KALSGTNSVD DSAPNKTTTR VAPAELTGAH SGESCKGSAL 120 SLCDVAANGS DDSNDNKAIV AVGFDTRKKV AHTFGQRTSI YRGVTRHRWT GRYEAHLWDN 180 SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWGPK ATTNFPISNY TKELEEMKHV 240 GKQEFIASLR RKSSGFSRGA SAYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFSTEEEAA 300 EAYDIAAIKF RGASAVTNFE MRRYDVDAIL NNSLPVGGIA KRFKVSPETE NKALVSTIQP 360 PQNTNASSSI NFSTIQPVSS IPYDSAITCY PHNLFHHFNP TNGESSTAEF AATMTDAIAL 420 ATLPPLAVPG FFVWPHQNY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19023 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G148000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235204 | 0.0 | AC235204.1 Glycine max strain Williams 82 clone GM_WBb0017J04, complete sequence. | |||
GenBank | AC235391 | 0.0 | AC235391.1 Glycine max strain Williams 82 clone GM_WBb0116P03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551311.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Swissprot | Q5YGP7 | 1e-123 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | K7MSE3 | 0.0 | K7MSE3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G29400.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65510.1 | 1e-125 | AINTEGUMENTA-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G148000.1.p |
Entrez Gene | 100795280 |