PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G125200.1.p
Common NameGLYMA_18G125200, LOC100798483
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 407aa    MW: 45717.9 Da    PI: 9.5701
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G125200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.4e-1572131155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Glyma.18G125200.1.p  72 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNDEEAAARAYDLAALKYWG 131
                          789******************888855566447*************************98 PP
2AP252.31.4e-16174225155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Glyma.18G125200.1.p 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1172131IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1672141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-1573140IPR001471AP2/ERF domain
PROSITE profilePS5103219.55973139IPR001471AP2/ERF domain
SMARTSM003807.4E-2573145IPR001471AP2/ERF domain
PRINTSPR003673.0E-57485IPR001471AP2/ERF domain
CDDcd000182.18E-25174235No hitNo description
PfamPF008475.1E-12174225IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18174235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-18175234IPR001471AP2/ERF domain
SMARTSM003802.7E-26175239IPR001471AP2/ERF domain
PROSITE profilePS5103218.953175233IPR001471AP2/ERF domain
PRINTSPR003673.0E-5215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MELAPVKSEL SPRSHRLVII DGSDVISTKC AKRRRRDSSM AVLGGNGQQG EQLEEQKQLG  60
GQSTATTVKR SSRFRGVSRH RWTGRFEAHL WDKGTWNPTQ KKKGKQVYLG AYNDEEAAAR  120
AYDLAALKYW GTSTFTNFPV SDYEKEIEIM KTVTKEEYLA SLRRRSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW  240
LRPGTHPTAS HDQKPSTDAQ LFATSNSMQT RGNIEVSNSN MHSFPSGELD STKKRDFSKY  300
MNPLSPCNKP SSPTALGLLL KSSVFRELMQ RNLNSSSEEA DVELKYPQEG NDGVGGIYDN  360
DNTSNSYFCS SNISRLPNLE SSEECPLPMY HGTMQSLWNS AFNMSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G125200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931680.0BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553203.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK7MRN30.0K7MRN3_SOYBN; Uncharacterized protein
STRINGGLYMA18G16236.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-72AP2 family protein