PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G115700.1.p
Common NameGLYMA_18G115700, LOC100784531
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 548aa    MW: 60526.6 Da    PI: 7.0605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17355401455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Glyma.18G115700.1.p 355 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 401
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-19348408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-20349412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-15354399No hitNo description
PfamPF000105.0E-15355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNNSVPDWNF GSDSCVTTTN QKKPMIGVDQ ELVELQWQNG QVVMHSQTHR KPFVNSITPR  60
PLRRNFQSTL RTSEPFGNSS NLIQDDETVS WIQYPLEDPL EQEFCSNLLS ELAPCEVESY  120
KQIKPFEEGK FTKLDASSTP HVTETSQSPT MKSSSFQEFS GIPIPAPRFH VSDSPQKNNN  180
DLGGSCKVQN FSHFSAPLNV SSASANAHFR DKITGNMSKN EIRECSLMTV GSSYCGSNHI  240
PQDPDASRAS SNGVWTTTLS AEPEAVRDHV PRTSPQNEKG KSEMLEPTTT SSSGGSGSSL  300
GKNCSLSTRN QGQKRKGIDV EESEEQSEDT ELKSALGNKS SQRAGLARRN RAAEVHNLSE  360
RRRRDRINEK MKALQQLIPH SSKTDKASML EEAIEYLKSL QLQLQLMWMG SGMAPIMFPG  420
IQHYMSQMGM GMATPPFPPI HNPMQLPRLP LDQSVSASQT PNQTLMSQNP ILGAFNYHNQ  480
MQNPALSEQY ARYMGYHLMQ NASQPMNVFR YGPQGVRHSQ TMITPSNSSG NMSGAANIDE  540
AVSGKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.134440.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G115700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352430.0AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626636.10.0transcription factor PIF4
RefseqXP_028215746.10.0transcription factor PIF4-like
TrEMBLA0A0R0EZ650.0A0A0R0EZ65_SOYBN; Uncharacterized protein
TrEMBLA0A445FRZ30.0A0A445FRZ3_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 isoform A
STRINGGLYMA18G14530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.25e-45phytochrome interacting factor 4