PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G113400.1.p
Common NameGLYMA_18G113400, LOC100791958
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 209aa    MW: 23639.3 Da    PI: 6.6478
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G113400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.4e-301871255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtpeLHe Fve+ve LGG++kAtPk+il++m+vkgL ++h+kSHLQ+YR+
  Glyma.18G113400.1.p 18 PRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRS 71
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-281472IPR009057Homeodomain-like
SuperFamilySSF466895.38E-151672IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-221772IPR006447Myb domain, plants
PfamPF002496.6E-81970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKNSKKTGVR KYHKSENPRL RWTPELHEYF VEVVEGLGGK NKATPKSILQ MMHVKGLRIS  60
HIKSHLQMYR SMKGHTILAS MQQEMEENVH VNDHHSICSN CSSQRSQEIH PLESKGLSQT  120
SETDNYDLNQ EPESSACLFS DTSNEENSRT MKFLDLSFSF GSPLTPTIDG DQERMRFSSP  180
NTADNIHVID SNSVESHGSN YINLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-191973458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G113400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-40AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553155.21e-155putative Myb family transcription factor At1g14600
TrEMBLK7MRD01e-154K7MRD0_SOYBN; Uncharacterized protein
STRINGGLYMA18G14071.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-26G2-like family protein