PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 322aa MW: 36296.6 Da PI: 9.0726

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G065200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	31	75	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a + + + +W+++a++++ g+t +++ + Glyma.18G065200.1.p 31 KWTPAENKLFENALAVYDRDtpdRWHKVAEMIP-GKTVMDVVKQYK 75 8***************99*********.*998887775 PP
2	Myb_DNA-binding	43.9	5.6e-14	142	186	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky Glyma.18G065200.1.p 142 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 186 8***************************89**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-4	23	76	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.38	27	81	IPR017884	SANT domain
SMART	SM00717	1.5E-9	28	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-11	30	83	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-6	31	75	IPR001005	SANT/Myb domain
CDD	cd00167	4.42E-8	31	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-11	134	191	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.5	135	191	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-16	136	190	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	138	190	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	139	189	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-12	142	186	IPR001005	SANT/Myb domain
CDD	cd00167	5.53E-11	142	187	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKWEMEILPP ASPYMYNSNW LLDDNRTNNT KWTPAENKLF ENALAVYDRD TPDRWHKVAE 60 MIPGKTVMDV VKQYKELEAD VCDIEAGLIP IPGYSSGTTT TSPFTLDWVN TSPAYDDGFK 120 GITAKRSSSG RPLEQERKKG VPWTEEEHKL FLLGLKKYGK GDWRNISRNY VITRTPTQVA 180 SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL TETTRTSSDE SKRSASPQNS AMLSRHQQLN 240 SNAASSGLNF QWSDQPNAGV AMALNPAHEQ VFMSPYGLNS YGFKMQGQNL HRSSLHESSY 300 LGPQTPNMVF QMQPSQHYSH A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-15	32	96	11	75	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.48394	0.0	leaf\| meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G065200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-141	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003551300.1	0.0	transcription factor DIVARICATA
Refseq	XP_028215518.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-122	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0B2PF84	0.0	A0A0B2PF84_GLYSO; Transcription factor DIVARICATA
TrEMBL	I1N015	0.0	I1N015_SOYBN; Uncharacterized protein
STRING	GLYMA18G07250.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162
Representative plant	OGRP275	17	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-88	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Glyma.18G065200.1.p
Entrez Gene	100784163

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]