PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G052500.1.p | ||||||||
Common Name | GLYMA_18G052500, LOC100790732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 40970 Da PI: 6.5792 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.8 | 1.5e-10 | 182 | 240 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ Glyma.18G052500.1.p 182 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 240 9*****************************************99999888777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-16 | 178 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.818 | 180 | 243 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.8E-8 | 182 | 237 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-11 | 182 | 233 | No hit | No description |
Pfam | PF00170 | 3.9E-9 | 182 | 240 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.42E-24 | 183 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MATQTQDPRS NPNPNPNAMS ATPSSSFFIR AAGGNGPSAA PVAGSGESHS HHRRAHSEVS 60 FRLPDDMIDL SPSDPFNGGS STASFEEIGS EDDLFSTYID VEKLGAGRGG NGSDQSGYGN 120 GAGSSCYNDG EKSPSTAAAR PRHRHSSSVD GSTSTSMFGE IMDAKKAMPP DKLAELWNID 180 PKRAKRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLYQ RDTTGLSSEN 240 TELKLRLQAM EQQAQLRDVL NDALMKEVER LKIATGEALN QSESFNLGMH QMPYAGSNFF 300 SIPPHSGPSG HQNMQLPPFG HSHSTVPTHQ LQQTNSHQMS DILQNDQLGR LQGLDISSKG 360 TPVVKSEGPS ISANESSTTF * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G052500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552912.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-107 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | K7MQ32 | 0.0 | K7MQ32_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G05880.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 1e-92 | basic leucine-zipper 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G052500.1.p |
Entrez Gene | 100790732 |
Publications ? help Back to Top | |||
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