PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G043000.1.p
Common NameGLYMA_18G043000, LOC100815360
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 477aa    MW: 51669.8 Da    PI: 8.2252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G043000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-32288341255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.18G043000.1.p 288 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 341
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-15285341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28286341IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23288341IPR006447Myb domain, plants
PfamPF002499.0E-7289340IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPLEGIFIEP TSTSTPDLSL HISPPSTSFS SSSICNNNNT SGGGGGINYE ARNSTSTNFP  60
SQAHIELSLG RNFSVGGGRG GGVPEEPLPH HNNNINNNPY YQTQQAHFHH LQHHSNASRA  120
TTTTSTTTSS SNHMSHINYG VSLLDVSSEG LRPIKGIPVY HNRSFPFLPS EHSRDNKDHH  180
AKMCLYHHMP TYPSLSSSCS PLCSSSSSSS SPAAPYFAAA AAAYRAATAT RFNGISGEAF  240
KSHHPLHHHH SSSPHYGVGL GPSHETSAGL MRSRFLPKLP AKRSMRAPRM RWTSTLHARF  300
VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDKPAA SSGLSDGSGE  360
DDMSPMGSSG GMRQFSDQRS LSDRPLQQDM DYSSGNNTLW SNSSSSRETW QQNNSNDVDG  420
FRPPIFQSQQ ISGGHQIQEC DSTQLKNSLS GSNLECKNPS LEFTLGRPDW NGKGQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16289343357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16289343357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16289343357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16289343357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.170210.0flower| hypocotyl| leaf| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G043000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-180AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602023.10.0transcription repressor KAN1 isoform X2
TrEMBLK7MPV50.0K7MPV5_SOYBN; Uncharacterized protein
STRINGGLYMA18G04880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-61G2-like family protein