PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G025800.1.p
Common NameGLYMA_18G025800, LOC100799687
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 276aa    MW: 30612.1 Da    PI: 9.3365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G025800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1289135354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Glyma.18G025800.1.p  89 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 135
                          79*************************8.....7***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04686135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-989138No hitNo description
PfamPF000102.8E-1089135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1489138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1092141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00364182217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGDKRLRNHG RNFRMVSIVT MENYYDSGWH MGNSSWAQCS DHSSSSFAVP IQILPHHVTD  60
SASLQFGEFH SWPLPIEGAA EERAISASKS HSQAEKRRRD RINAQLATLR KLIPKSDKMD  120
KAALLGSVID QVKDLKRKAM DVSRAFTVPT EIDEVSIDYD HVQDESCTKV NKLKDNIVIK  180
ASVCCDDRPE LFPELIQVLK GLRLTAVKAD IASVGGRIKS ILVLCSKDRE DSVCLATLKQ  240
SLKSAVTKIA SSSMASSCPA RSKRQRFFLP SHCLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.364870.0hypocotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G025800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894760.0BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552298.20.0transcription factor bHLH51
TrEMBLI1MZ110.0I1MZ11_SOYBN; Uncharacterized protein
STRINGGLYMA18G02940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-46bHLH family protein