PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G020900.13.p
Common NameGLYMA_18G020900, LOC100793353
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 363aa    MW: 41052.7 Da    PI: 8.2097
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G020900.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.1e-1176109336
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                            +k +rr+++NReAAr+sR+RKka++++Le    
  Glyma.18G020900.13.p  76 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRL 109
                           7899*************************97544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.2E-869120No hitNo description
SMARTSM003381.8E-774137IPR004827Basic-leucine zipper domain
PfamPF001709.7E-876112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09476120IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.96E-778119No hitNo description
CDDcd147085.35E-2278130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141442.8E-32164238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSASPQFVS SRRMSVYDPI HQISMWGEGF KSNGNLSAAM PLIDETDMKF DSQSEDASHG  60
ILGEPNKYDQ EANKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER  120
ARQQGIYIGG GLDSNHLGFA GSVNSGITTF EMEYGHWVNE QNRQITELRN ALNAHIGDVE  180
LRILVDGMMS HYAEMFRMKS AAAKADVFYV MSGMWKTTAE RFFLWIGGFR PSELLKVLGP  240
LIEPLTEQQR LDIYNLGQSC QQAEDALSQG MDKLRQTLAD SVAAGQFMEG TYIPQMTSAM  300
DKLKALVSFV NQADHLRQET LQQMSRILTI RQAARCLLAL GEYFQRLRAL SSLWSNRPRE  360
PA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.549360.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G020900.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0978790.0BT097879.1 Soybean clone JCVI-FLGm-22P15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601811.10.0uncharacterized protein LOC100793353 isoform X1
RefseqXP_006601812.10.0uncharacterized protein LOC100793353 isoform X1
RefseqXP_006601813.10.0uncharacterized protein LOC100793353 isoform X1
RefseqXP_006601814.10.0uncharacterized protein LOC100793353 isoform X1
RefseqXP_014625703.10.0uncharacterized protein LOC100793353 isoform X1
RefseqXP_028213899.10.0transcription factor TGA4-like isoform X2
RefseqXP_028213900.10.0transcription factor TGA4-like isoform X2
RefseqXP_028213901.10.0transcription factor TGA4-like isoform X2
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A445FMX90.0A0A445FMX9_GLYSO; Transcription factor TGA4 isoform A
TrEMBLI1MYW10.0I1MYW1_SOYBN; Uncharacterized protein
STRINGGLYMA18G02430.70.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-180TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]