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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.18G010000.1.p |
Common Name | GLYMA_18G010000, LOC100137074 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
Trihelix |
Protein Properties |
Length: 377aa MW: 43068.6 Da PI: 5.5654 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.18G010000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 86.7 | 2.7e-27 | 66 | 147 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++
Glyma.18G010000.1.p 66 WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 147
********************************************************************84...556899***997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPP PMILGESSGE DPEVEIKAPK 60 KRAETWVQDE TRSLIGLRRE MDSLFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN 120 LLKEFKKAKH QDRGSGSAKM SYYKEIDEIL RERSKNVQYK SPTPPPKVDS FMQFADKGID 180 DTSISFGPVE ATGRPTLNLE RSLDHDGHPL AITTADAVAA SGVPPWNWRE TPGNGGESQS 240 CCGRVISVKW GDYTRRIGID GTPEAIKEAI RAAFRLRTKR TFWLEDEDQI IRSIDREMPL 300 GNYTLHIDEG MAIKLPLYDE PDHIPVHTED KIFYTEDDFR DFLTRRGWIC LREFDSYRNI 360 DNMDDLRPGA IYRGVS*
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Expression -- UniGene
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UniGene ID |
E-value |
Expressed in |
Gma.8135 | 0.0 | cotyledon| flower| meristem| root| somatic embryo |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |