PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G010000.1.p
Common NameGLYMA_18G010000, LOC100137074
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 377aa    MW: 43068.6 Da    PI: 5.5654
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G010000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.7e-2766147286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y+++++
  Glyma.18G010000.1.p  66 WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 147
                          ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014474.45E-53241No hitNo description
Gene3DG3DSA:1.10.10.605.1E-457127IPR009057Homeodomain-like
PROSITE profilePS500908.45558122IPR017877Myb-like domain
SMARTSM007170.001562124IPR001005SANT/Myb domain
CDDcd122032.49E-2964129No hitNo description
PfamPF138379.4E-2265149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPP PMILGESSGE DPEVEIKAPK  60
KRAETWVQDE TRSLIGLRRE MDSLFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN  120
LLKEFKKAKH QDRGSGSAKM SYYKEIDEIL RERSKNVQYK SPTPPPKVDS FMQFADKGID  180
DTSISFGPVE ATGRPTLNLE RSLDHDGHPL AITTADAVAA SGVPPWNWRE TPGNGGESQS  240
CCGRVISVKW GDYTRRIGID GTPEAIKEAI RAAFRLRTKR TFWLEDEDQI IRSIDREMPL  300
GNYTLHIDEG MAIKLPLYDE PDHIPVHTED KIFYTEDDFR DFLTRRGWIC LREFDSYRNI  360
DNMDDLRPGA IYRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5060145186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.81350.0cotyledon| flower| meristem| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G010000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2852650.0EU285265.1 Glycine max GT-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236549.10.0GT-1
RefseqXP_028214687.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A445FMH40.0A0A445FMH4_GLYSO; Trihelix transcription factor GT-1 isoform A
TrEMBLA9UHK70.0A9UHK7_SOYBN; GT-1
STRINGGLYMA18G01360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]