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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G246200.2.p |
| Common Name | GLYMA_17G246200, LOC100778242 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
G2-like |
| Protein Properties |
Length: 244aa MW: 26710.1 Da PI: 9.576 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G246200.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 101.8 | 4.5e-32 | 139 | 192 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
Glyma.17G246200.2.p 139 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 192
9****************************************************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MFTNSQTVMQ TLLSSPSAEP DLSLNISPPS ISDSEAAKDV VGSFGKVLYS DICSTSDSGS 60
SGGSDLSHEF HNLGHHHHRE PTLKLGFGTV DLNPHHHQVQ GVPRSFNHHH HLLQPHIYGR 120
DFKRSARVVN GVKRSVRAPR MRWTTTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL 180
AHVKSHLQMY RTVKSTDKGI STAGHGQTDI GLNPRLGINV HLHAPSPICD TPNLPDPIQN 240
SQR*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 5e-17 | 140 | 194 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 5e-17 | 140 | 194 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 5e-17 | 140 | 194 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 5e-17 | 140 | 194 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 5e-17 | 140 | 194 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
Plant Physiol., 2016. 172(4): p. 2403-2415
[PMID:27794102]
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