PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G241300.1.p
Common NameGLYMA_17G241300, LOC100812466
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 375aa    MW: 42660.6 Da    PI: 7.9157
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G241300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35251162102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sw e  ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg k
  Glyma.17G241300.1.p  25 FLTKTYQLVEDPSTDHIVSWGEGDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGAK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Glyma.17G241300.1.p 106 NLLCEIHRRKT 116
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MALLLDNCES ILLSLDTHKS VPAPFLTKTY QLVEDPSTDH IVSWGEGDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGAKNLLCE IHRRKTPHQH  120
HQEVQAMNNH HHHYHHHQFG LNVPPFFPFH NSRLSISPPH DSDELIIPNW CDSPPRGVAS  180
VNNNNNNNNN YNTVTALSED NERLRRSNNM LMSEIEHMKK LYNGIIYFVQ NHVKPVAPSN  240
NNTFPSFLLC SNNINSNSNN NTSSQPQASP MSNVSTVQRQ VKQFLGCYSN NTKQARAVNS  300
SPTNSSITIV EEEASSNSCK TKLFGVSLQS KKRVHPDEYG SNYILQSSET NNKARLVLEN  360
DELLGLNLMP PSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-212111617122Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84660.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G241300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933310.0BT093331.1 Soybean clone JCVI-FLGm-24E17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550334.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLI1MXN20.0I1MXN2_SOYBN; Uncharacterized protein
STRINGGLYMA17G35980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-107heat shock transcription factor B4