PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G241000.3.p
Common NameGLYMA_17G241000, LOC102668194
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 267aa    MW: 29153.5 Da    PI: 6.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G241000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-121051441155
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Glyma.17G241000.3.p 105 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 144
                          8******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.30394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14101149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-14105148No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-15105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10105144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAGDVGRALP PPDSEEFSTL FSQLLHNSPP LGMDPNHSPP DFTPHNNTID ININNNIINN  60
NNNNNPVPSS PSNFNFSDPH HYIPASDATT FKQHTPDFTS FSVERRRSRI NEKMKALQNL  120
IPNSNKTDKA SMLDEAIEYL KQLQLQVQML MMRNGLSLHP MSLPGGLRPM IMSQTGLNLD  180
GSNGFHNSTS AIASSSNDES LVRHAFSFPK QCSISNQSIG VPSVTNIATS DTSSTFHPSI  240
KDALYGNMPQ LFMDTTTMGK PSPDVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G241000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150366e-84AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624838.10.0transcription factor ALC isoform X3
TrEMBLA0A0R0FQZ00.0A0A0R0FQZ0_SOYBN; Uncharacterized protein
STRINGGLYMA17G35951.11e-170(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-24bHLH family protein