PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G239900.1.p | ||||||||
Common Name | LOC100787323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 43873.6 Da PI: 7.9864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 154 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Glyma.17G239900.1.p 154 YTCGVCGRKCKTHLDLKKHFKQlH 177 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.1E-5 | 102 | 144 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.699 | 154 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 177 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 4.69E-13 | 168 | 308 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.1E-5 | 239 | 304 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MKNSLFLLHN ANTIHFNLHS QITLPSIPLT TITTTKPFPH NRHFPRIQCC SNNNNNNSIE 60 IDMVKNSQGI YAPKASKVVV LWDLDNKPPR GPPYDVAISL KTLAARFGDL VDFSAYANRH 120 AFVHLPQWVL QQRRDRKNLD ILERKGIITP PEPYTCGVCG RKCKTHLDLK KHFKQLHQRE 180 RQKKLNRLKS LKGKKRHRFK ERFLRGNHKY DDAARTLVVP KVGYGLAAEL RRAGVFVKTV 240 QDKPQAADWA LKRQMVHSMS RGIDWLFLVS DDSDFSEMLR RAREADLGTV VVGDWDRALG 300 RHADLWVPWS GVENGEVGDL VPKRRRENSR RREQGEEHGF GLEDDDDDDG EDEELGQEYM 360 LLYDDDDDDE GEEEDGLYIF * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.63073 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G239900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160873.1 | 0.0 | hypothetical protein PHAVU_001G023900g | ||||
TrEMBL | A0A0R0FQX1 | 0.0 | A0A0R0FQX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35830.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 | Representative plant | OGRP3048 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-154 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G239900.1.p |
Entrez Gene | 100787323 |