PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G239900.1.p
Common NameLOC100787323
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 381aa    MW: 43873.6 Da    PI: 7.9864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G239900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056154177123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ Cg+ ++++ +Lk+H +  H
  Glyma.17G239900.1.p 154 YTCGVCGRKCKTHLDLKKHFKQlH 177
                          9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.1E-5102144IPR029060PIN domain-like
PROSITE profilePS5015710.699154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
CDDcd061674.69E-13168308No hitNo description
Gene3DG3DSA:3.40.50.10101.1E-5239304IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKNSLFLLHN ANTIHFNLHS QITLPSIPLT TITTTKPFPH NRHFPRIQCC SNNNNNNSIE  60
IDMVKNSQGI YAPKASKVVV LWDLDNKPPR GPPYDVAISL KTLAARFGDL VDFSAYANRH  120
AFVHLPQWVL QQRRDRKNLD ILERKGIITP PEPYTCGVCG RKCKTHLDLK KHFKQLHQRE  180
RQKKLNRLKS LKGKKRHRFK ERFLRGNHKY DDAARTLVVP KVGYGLAAEL RRAGVFVKTV  240
QDKPQAADWA LKRQMVHSMS RGIDWLFLVS DDSDFSEMLR RAREADLGTV VVGDWDRALG  300
RHADLWVPWS GVENGEVGDL VPKRRRENSR RREQGEEHGF GLEDDDDDDG EDEELGQEYM  360
LLYDDDDDDE GEEEDGLYIF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.630730.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G239900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160873.10.0hypothetical protein PHAVU_001G023900g
TrEMBLA0A0R0FQX10.0A0A0R0FQX1_SOYBN; Uncharacterized protein
STRINGGLYMA17G35830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-154C2H2-like zinc finger protein